SMTL ID : 5xst.1

novel orally efficacious inhibitors complexed with PARP1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x 8E6: 6-fluoranyl-2-(4,5,6,7-tetrahydrothieno[3,2-c]pyridin-2-yl)-1~{H}-benzimidazole-4-carboxamide(Non-covalent)

8E6.1: 15 residues within 4Å: Chain A: Q.99, E.103, D.106, H.202, G.203, T.227, G.228, Y.229, Y.236, F.237, A.238, K.243, S.244, Y.247, E.328 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:E.103, A:Y.229, A:Y.236, A:Y.236, A:Y.247, A:Y.247 Hydrogen bonds: A:E.103, A:E.103, A:G.203, A:G.203 pi-Stacking: A:Y.247

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.205, T.206, T.207 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.205, A:T.206, A:T.207, A:T.207 Water bridges: A:S.21, A:K.24, A:A.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, X. et al., Design and synthesis of 2-(4,5,6,7-tetrahydrothienopyridin-2-yl)-benzoimidazole carboxamides as novel orally efficacious Poly(ADP-ribose)polymerase (PARP) inhibitors. Eur J Med Chem (2018)

Release Date

2018-04-25

Peptides

Poly [ADP-ribose] polymerase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Poly [ADP-ribose] polymerase 1