SMTL ID : 5xsz.1

Crystal structure of zebrafish lysophosphatidic acid receptor LPA6

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

3 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.1: 5 residues within 4Å: Chain A: Y.108, Y.112, G.158, S.159, I.199 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.108, A:Y.108, A:Y.112, A:Y.112, A:Y.112, A:I.199 OLC.2: 9 residues within 4Å: Chain A: Y.66, L.116, C.120, V.123, D.124, L.127, R.139, I.206, P.207 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.116, A:I.206, A:P.207 Hydrogen bonds: A:D.124 OLC.3: 8 residues within 4Å: Chain A: T.65, M.68, N.69, K.145, C.148, A.149, W.152, L.156 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.152, A:L.156 Hydrogen bonds: A:N.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taniguchi, R. et al., Structural insights into ligand recognition by the lysophosphatidic acid receptor LPA6. Nature (2017)

Release Date

2017-08-16

Peptides

Lysophosphatidic acid receptor 6a,Endolysin,Lysophosphatidic acid receptor 6a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Lysophosphatidic acid receptor 6a,Endolysin,Lysophosphatidic acid receptor 6a