SMTL ID : 5xuk.1

Crystal structure of Helicobacter pylori holo-[acyl-carrier-protein] synthase (AcpS) in complex with coenzyme A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-trimer

Ligands

3 x COA: COENZYME A(Non-covalent)

COA.1: 18 residues within 4Å: Chain A: S.42, F.46, K.74, K.77, N.78, A.79, P.80, I.101, S.102, H.103 Chain C: D.5, E.51, S.54, K.55, Q.58, V.59, G.60, I.61 16 PLIP interactions: 9 interactions with chain A, 7 interactions with chain C Hydrogen bonds: A:N.78, A:N.78, A:H.103, A:H.103, C:K.55, C:Q.58, C:I.61, C:I.61 Water bridges: A:H.103, A:H.103, C:Q.58 Salt bridges: A:K.74, A:H.103, A:H.103, C:K.55, C:K.55 COA.2: 18 residues within 4Å: Chain A: D.5, E.51, S.54, K.55, Q.58, V.59, G.60, I.61 Chain B: S.42, F.46, K.74, K.77, N.78, A.79, P.80, I.101, S.102, H.103 16 PLIP interactions: 7 interactions with chain A, 9 interactions with chain B Hydrogen bonds: A:K.55, A:Q.58, A:I.61, A:I.61, B:N.78, B:N.78, B:H.103, B:H.103 Water bridges: A:Q.58, B:H.103, B:H.103 Salt bridges: A:K.55, A:K.55, B:K.74, B:H.103, B:H.103 COA.3: 18 residues within 4Å: Chain B: D.5, E.51, S.54, K.55, Q.58, V.59, G.60, I.61 Chain C: S.42, F.46, K.74, K.77, N.78, A.79, P.80, I.101, S.102, H.103 16 PLIP interactions: 7 interactions with chain B, 9 interactions with chain C Hydrogen bonds: B:K.55, B:Q.58, B:I.61, B:I.61, C:N.78, C:N.78, C:H.103, C:H.103 Water bridges: B:Q.58, C:H.103, C:H.103 Salt bridges: B:K.55, B:K.55, C:K.74, C:H.103, C:H.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liao, Y.P. et al., Crystal structures of acyl carrier protein synthases (AcpS) from three Gram-negative bacteria. To Be Published

Release Date

2018-06-27

Peptides

Holo-[acyl-carrier-protein] synthase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Holo-[acyl-carrier-protein] synthase