SMTL ID : 5xv7.1

SRPK1 in complex with Alectinib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

monomer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: D.72, N.74, D.135, Y.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.74, A:D.135 EDO.2: 4 residues within 4Å: Chain A: D.228, I.229, Q.230, R.235 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.228 EDO.3: 6 residues within 4Å: Chain A: H.104, K.108, K.112, Y.161, L.196 Ligands: EMH.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.161, A:Y.161 EDO.4: 4 residues within 4Å: Chain A: H.224, T.226, E.227, Y.245 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.226

1 x EMH: 9-ethyl-6,6-dimethyl-8-[4-(morpholin-4-yl)piperidin-1-yl]-11-oxo-6,11-dihydro-5H-benzo[b]carbazole-3-carbonitrile(Non-covalent)

EMH.5: 17 residues within 4Å: Chain A: R.18, L.20, G.21, V.28, A.41, F.99, V.101, L.102, G.103, H.104, L.154, V.157, Y.161, L.165, A.213, D.214 Ligands: EDO.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.20, A:L.20, A:V.28, A:A.41, A:F.99, A:V.101, A:L.102, A:L.154, A:V.157 Hydrogen bonds: A:L.102, A:D.214, A:D.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hatcher, J.M. et al., SRPKIN-1: A Covalent SRPK1/2 Inhibitor that Potently Converts VEGF from Pro-angiogenic to Anti-angiogenic Isoform. Cell Chem Biol (2018)

Release Date

2018-03-14

Peptides

serine-arginine (SR) protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

serine-arginine (SR) protein kinase 1