SMTL ID : 5xvk.1 (1 other biounit)

Crystal structure of mouse Nicotinamide N-methyltransferase (NNMT) bound with end product, 1-methyl Nicotinamide (MNA)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 22 residues within 4Å: Chain A: Y.31, Y.40, Y.45, G.83, S.84, G.85, T.87, Y.89, D.105, Y.106, T.107, N.110, C.161, D.162, V.163, T.164, T.183, L.184, C.185, A.189, Y.224 Ligands: 8GC.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:Y.40, A:Y.45, A:Y.89, A:Y.106, A:T.107, A:T.107, A:N.110, A:D.162, A:D.162, A:V.163, A:T.183, A:T.183, A:T.183 Water bridges: A:T.183 pi-Stacking: A:Y.31

1 x 8GC: 3-carbamoyl-1-methylpyridin-1-ium(Non-covalent)

8GC.2: 12 residues within 4Å: Chain A: Y.40, Y.44, L.184, D.187, A.218, S.221, Y.223, Y.224, S.233, Y.262, S.267 Ligands: SAH.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.184, A:Y.224 Hydrogen bonds: A:S.221, A:S.233, A:S.233, A:S.267 pi-Stacking: A:Y.224

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: S.222, Y.223, K.230 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.230, A:K.230 Water bridges: A:N.268

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Swaminathan, S. et al., Crystal structures of monkey and mouse nicotinamide N-methyltransferase (NNMT) bound with end product, 1-methyl nicotinamide. Biochem. Biophys. Res. Commun. (2017)

Release Date

2017-08-02

Peptides

Nicotinamide N-methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nicotinamide N-methyltransferase

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