SMTL ID : 5xvq.1 (1 other biounit)

Crystal structure of monkey Nicotinamide N-methyltransferase (NNMT) bound with end product, 1-methyl Nicotinamide (MNA)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 22 residues within 4Å: Chain A: Y.31, F.35, Y.40, Y.45, G.83, S.84, G.85, T.87, Y.89, Q.90, D.105, Y.106, S.107, N.110, C.161, D.162, V.163, T.183, L.184, C.185, A.189 Ligands: 8GC.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Y.40, A:Y.40, A:Y.106, A:S.107, A:N.110, A:D.162, A:V.163, A:T.183 Water bridges: A:T.183 pi-Stacking: A:Y.31

1 x 8GC: 3-carbamoyl-1-methylpyridin-1-ium(Non-covalent)

8GC.2: 9 residues within 4Å: Chain A: Y.40, L.184, D.187, A.218, S.221, Y.224, S.233, Y.262 Ligands: SAH.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.184, A:Y.224, A:Y.262 Hydrogen bonds: A:S.221, A:S.233, A:S.233 Water bridges: A:A.188 pi-Stacking: A:Y.224

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: K.75, D.178, K.208, P.209, G.210, G.211, F.212 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.75, A:D.178, A:D.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Swaminathan, S. et al., Crystal structures of monkey and mouse nicotinamide N-methyltransferase (NNMT) bound with end product, 1-methyl nicotinamide. Biochem. Biophys. Res. Commun. (2017)

Release Date

2017-08-02

Peptides

Nicotinamide N-methyltransferase (NNMT): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nicotinamide N-methyltransferase (NNMT)

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