SMTL ID : 5xyz.1

The structure of human BTK kinase domain in complex with a covalent inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

homo-dimer

Ligands

2 x GYL: N-[3-(5-{[(2-chloro-6-fluorophenyl)methyl]amino}-1H-1,2,4-triazol-3-yl)phenyl]propanamide(Covalent)

GYL.1: 14 residues within 4Å: Chain A: L.17, V.25, A.37, I.38, K.39, T.83, E.84, Y.85, M.86, G.89, C.90, L.137, S.147, F.149 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.17, A:T.83, A:Y.85, A:L.137, A:F.149 Hydrogen bonds: A:T.83, A:T.83, A:E.84, A:M.86, A:C.90 pi-Cation interactions: A:K.39 GYL.2: 15 residues within 4Å: Chain B: L.17, V.25, A.37, I.38, K.39, I.81, T.83, E.84, Y.85, M.86, G.89, C.90, L.137, S.147, F.149 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:K.39, B:I.81, B:T.83, B:Y.85, B:L.137, B:F.149 Hydrogen bonds: B:T.83, B:T.83, B:E.84, B:M.86, B:C.90 pi-Cation interactions: B:K.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., In Silico Identification of a Novel Hinge-Binding Scaffold for Kinase Inhibitor Discovery. J. Med. Chem. (2017)

Release Date

2018-05-23

Peptides

Tyrosine-protein kinase BTK: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosine-protein kinase BTK