SMTL ID : 5xz2.2 (1 other biounit)

Crystal structure of adenylate kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x AP5: BIS(ADENOSINE)-5'-PENTAPHOSPHATE(Non-covalent)

AP5.1: 32 residues within 4Å: Chain A: G.18, P.19, G.20, S.21, G.22, K.23, G.24, T.25, S.41, G.42, L.45, R.46, M.63, E.67, L.68, V.69, V.74, G.96, Y.97, R.99, Q.103, R.130, L.131, R.134, R.140, D.142, R.151, S.177, L.179, V.181, V.184 Ligands: SO4.2 35 PLIP interactions: 35 interactions with chain A Hydrogen bonds: A:G.20, A:S.21, A:G.22, A:K.23, A:G.24, A:T.25, A:T.25, A:S.41, A:G.42, A:V.69, A:G.96, A:R.99, A:Q.103, A:R.130, A:R.134, A:R.151, A:L.179 Water bridges: A:S.41, A:M.63, A:G.66, A:R.151, A:V.181 Salt bridges: A:K.23, A:K.23, A:K.23, A:R.46, A:R.99, A:R.99, A:R.134, A:R.140, A:R.140, A:R.140, A:R.151 pi-Cation interactions: A:R.130, A:R.130

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: T.126, R.130, E.178 Ligands: AP5.1 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.178 Salt bridges: A:R.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moon, S. et al., Structural analyses of adenylate kinases from Antarctic and tropical fishes for understanding cold adaptation of enzymes. Sci Rep (2017)

Release Date

2018-07-18

Peptides

Adenylate kinase isoenzyme 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Adenylate kinase isoenzyme 1

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