SMTL ID : 5xz4.1 (1 other biounit)

The X-tay structure of Bumblebee PGRP-SA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.41 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: T.95, I.96, G.97, Y.98, N.99, K.100 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.97, A:N.99, A:N.99 Water bridges: A:K.100 Salt bridges: A:K.100 SO4.2: 4 residues within 4Å: Chain A: S.23, I.24, Y.26, R.90 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.24 Water bridges: A:R.90 Salt bridges: A:R.90

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 3 residues within 4Å: Chain A: E.55, N.56, S.59 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.55, A:E.55, A:N.56, A:S.59, A:S.59 Water bridges: A:Y.60, A:D.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y.J. et al., Structural Insights into the Preferential Binding of PGRP-SAs from Bumblebees and Honeybees to Dap-Type Peptidoglycans Rather than Lys-Type Peptidoglycans. J Immunol. (2019)

Release Date

2018-09-19

Peptides

Bumblebee peptidoglycan recognition protein SA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bumblebee peptidoglycan recognition protein SA

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