SMTL ID : 5xza.1

Crystal Structure of Phosphofructokinase from Staphylococcus aureus in complex with ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: S.9, G.10, Y.41, R.72, C.73, F.76, K.77, G.102, D.103, G.104, S.105, R.107, G.108, R.111 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.9, A:C.73, A:C.73, A:G.102, A:G.102, A:G.104, A:S.105, A:R.111 Water bridges: A:G.11, A:G.11, A:Y.41, A:R.72, A:S.105, A:T.127 ADP.4: 14 residues within 4Å: Chain B: S.9, G.10, Y.41, R.72, C.73, F.76, K.77, G.102, D.103, G.104, S.105, R.107, G.108, R.111 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:S.9, B:C.73, B:C.73, B:G.102, B:G.102, B:G.104, B:S.105, B:R.111 Water bridges: B:G.11, B:G.11, B:Y.41, B:R.72, B:S.105, B:T.127

2 x FLC: CITRATE ANION(Non-covalent)

FLC.2: 8 residues within 4Å: Chain A: R.21, R.25, V.57, G.58, D.59 Chain B: R.156, G.187, K.215 11 PLIP interactions: 8 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:V.57, A:D.59, B:G.187 Water bridges: A:T.60, A:Q.62, A:Q.62 Salt bridges: A:R.21, A:R.25, A:R.25, B:R.156, B:K.215 FLC.5: 8 residues within 4Å: Chain A: R.156, G.187, K.215 Chain B: R.21, R.25, V.57, G.58, D.59 11 PLIP interactions: 8 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:V.57, B:D.59, A:G.187 Water bridges: B:T.60, B:Q.62, B:Q.62 Salt bridges: B:R.21, B:R.25, B:R.25, A:R.156, A:K.215

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: F.137, F.141, D.142, W.181 Chain B: A.261 No protein-ligand interaction detected (PLIP) GOL.6: 5 residues within 4Å: Chain A: A.261 Chain B: F.137, F.141, D.142, W.181 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tian, T. et al., Structural Insights into the Regulation of Staphylococcus aureus Phosphofructokinase by Tetramer-Dimer Conversion. Biochemistry (2018)

Release Date

2019-03-13

Peptides

ATP-dependent 6-phosphofructokinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ATP-dependent 6-phosphofructokinase

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