SMTL ID : 5xzu.1

Crystal structure of GH10 xylanase from Bispora. sp MEY-1 with xylobiose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

1 x BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-BGC.1: 14 residues within 4Å: Chain A: D.20, A.47, N.48, K.51, H.84, W.88, E.91, N.134, E.135, E.216, H.218, E.248, W.288, W.296 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.51, A:H.84, A:H.84, A:N.134, A:E.135, A:N.182

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.63, T.65 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.63, A:G.66, A:G.66 NAG.3: 2 residues within 4Å: Chain A: Y.254, N.258 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:N.258 Water bridges: A:Y.254, A:N.258, A:T.260, A:T.260, A:S.261 NAG.4: 5 residues within 4Å: Chain A: R.29, M.32, K.33, N.36, A.76 No protein-ligand interaction detected (PLIP) NAG.5: 2 residues within 4Å: Chain B: Y.254, N.258 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:N.258 Hydrogen bonds: B:S.261 Water bridges: B:N.258, B:T.260 NAG.6: 6 residues within 4Å: Chain B: R.29, M.32, K.33, N.36, I.73, A.76 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

You, S. et al., Insight into the functional roles of Glu175 in the hyperthermostable xylanase XYL10C-Delta N through structural analysis and site-saturation mutagenesis. Biotechnol Biofuels (2018)

Release Date

2018-05-02

Peptides

Beta-xylanase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-xylanase

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