SMTL ID : 5y0n.1

Crystal structure of Bacillus subtilis TmcAL bound with ATP (SeMet derivative)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 19 residues within 4Å: Chain A: V.27, V.28, E.29, Y.30, H.34, G.36, H.37, Y.39, H.40, F.120, G.121, N.182, A.206, R.207, I.208, I.224, S.226, A.227, T.228 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:E.29, A:Y.30, A:G.121, A:N.182, A:N.182, A:R.207, A:I.208, A:I.208, A:A.227, A:T.228, A:T.228 Water bridges: A:V.27, A:N.31, A:H.37 Salt bridges: A:H.37, A:R.207, A:R.207 pi-Cation interactions: A:R.207, A:R.207 ATP.2: 20 residues within 4Å: Chain B: V.27, V.28, E.29, Y.30, H.34, G.36, H.37, H.40, R.64, F.120, G.121, S.122, N.182, L.185, A.206, R.207, I.208, I.224, S.226, A.227 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:E.29, B:E.29, B:G.121, B:R.207, B:I.208, B:I.208, B:A.227 Salt bridges: B:H.34, B:H.37, B:H.37, B:R.64, B:R.64, B:R.207 pi-Cation interactions: B:R.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taniguchi, T. et al., Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis. Nat. Chem. Biol. (2018)

Release Date

2018-07-18

Peptides

UPF0348 protein B4417_3650: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

UPF0348 protein B4417_3650