SMTL ID : 5y0q.1

Crystal structure of BsTmcAL bound with AMPCPP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x APC: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)

APC.1: 18 residues within 4Å: Chain A: V.26, V.27, E.28, Y.29, H.33, G.35, H.36, Y.38, H.39, F.119, G.120, N.181, R.206, I.207, I.223, S.225, A.226, T.227 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:E.28, A:Y.29, A:G.120, A:G.120, A:N.181, A:N.181, A:R.206, A:R.206, A:I.207, A:I.207, A:A.226, A:T.227, A:T.227, A:T.227 Water bridges: A:V.26, A:N.30, A:H.36 Salt bridges: A:R.206 pi-Cation interactions: A:R.206 APC.2: 18 residues within 4Å: Chain B: V.26, V.27, E.28, Y.29, H.33, G.35, H.36, R.63, G.120, S.121, N.181, L.184, A.205, R.206, I.207, I.223, S.225, A.226 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:E.28, B:E.28, B:R.63, B:R.63, B:G.120, B:R.206, B:R.206, B:I.207, B:I.207, B:A.226 Salt bridges: B:H.33, B:R.206 pi-Cation interactions: B:R.206, B:R.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taniguchi, T. et al., Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis. Nat. Chem. Biol. (2018)

Release Date

2018-07-18

Peptides

UPF0348 protein B4417_3650: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

UPF0348 protein B4417_3650

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