SMTL ID : 5y1w.1

Crystal structure of Plasmodium falciparum aminopeptidase N with Magnesium bound to active site Zinc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.325, H.329, E.348, Y.409 Ligands: MG.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.325, A:H.329, A:E.348, H2O.2, H2O.3

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: A.290, E.292, E.348, Y.409 Ligands: ZN.1 No protein-ligand interaction detected (PLIP) MG.3: 1 residues within 4Å: Chain A: E.786 No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Chain A: G.79 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.79, H2O.21, H2O.21

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: Y.682, S.732, L.733, K.736, Y.767 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.732

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marapaka, A.K. et al., Crystal structure of Plasmodium falciparum aminopeptidase N with Magnesium bound to active site Zinc. To Be Published

Release Date

2018-08-01

Peptides

M1 family aminopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

M1 family aminopeptidase

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