SMTL ID : 5y20.1

Crystal structure of AL1 PHD finger bound to H3K4me3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

monomer

Ligands

1 x ALA- ARG- THR- M3L- GLN- THR- ALA: PEPTIDE FROM HISTONE H3(Non-covalent)

ALA-ARG-THR-M3L-GLN-THR-ALA.1: 16 residues within 4Å: Chain A: T.2, Y.11, N.13, D.14, E.15, F.16, W.17, I.18, C.19, C.20, D.21, E.24, W.26, I.42, K.43, Y.45 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Y.11, A:F.16, A:W.17, A:W.26, A:Y.45 Hydrogen bonds: A:N.13, A:W.17, A:W.17, A:C.19, A:C.20, A:I.42 Water bridges: A:Y.11, A:D.21 Salt bridges: A:D.21, A:E.24 pi-Cation interactions: A:Y.11, A:W.26, A:W.26

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.4, C.7, H.28, C.31 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.4, A:C.7, A:H.28, A:C.31 ZN.3: 4 residues within 4Å: Chain A: C.20, C.23, C.47, C.50 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.20, A:C.23, A:C.47, A:C.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, S. et al., Systematic Profiling of Histone Readers in Arabidopsis thaliana. Cell Rep (2018)

Release Date

2018-01-24

Peptides

PHD finger protein ALFIN-LIKE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PHD finger protein ALFIN-LIKE 1