SMTL ID : 5y2d.1

Crystal structure of H. pylori HtrA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.70 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ALA- ALA- ALA: UNK-UNK-UNK(Non-covalent)

ALA-ALA-ALA.1: 5 residues within 4Å: Chain A: S.291, V.292, E.293, T.320, N.321 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:S.291, A:E.293 Hydrogen bonds: A:S.291, A:E.293

1 x ALA- ALA- ALA- ALA- ALA: UNK-UNK-UNK-UNK-UNK(Non-covalent)

ALA-ALA-ALA-ALA-ALA.2: 4 residues within 4Å: Chain C: A.7, A.9, A.10, A.11 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:A.9

1 x ALA- ALA- ALA- ALA- ALA- ALA- ALA- ALA: UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK(Non-covalent)

ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA.3: 2 residues within 4Å: Chain B: A.6, A.7 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:A.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., The unique trimeric assembly of the virulence factor HtrA fromHelicobacter pylorioccurs via N-terminal domain swapping. J.Biol.Chem. (2019)

Release Date

2018-08-15

Peptides

Periplasmic serine endoprotease DegP-like: A
UNK-UNK-K-UNK-UNK-UNK-UNK-UNK-UNK-UNK: B
UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
F

Periplasmic serine endoprotease DegP-like

UNK-UNK-K-UNK-UNK-UNK-UNK-UNK-UNK-UNK

UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK

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