SMTL ID : 5y2i.1

Phosphoglycerate mutase 1 (PGAM1) complexed with its inhibitor PGMI-004A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-dimer

Ligands

1 x 8KX: 3,4-bis(oxidanyl)-9,10-bis(oxidanylidene)-~{N}-[4-(trifluoromethyl)phenyl]anthracene-2-sulfonamide(Non-covalent)

8KX.1: 12 residues within 4Å: Chain A: E.19, N.20, R.21, F.22, R.90, Y.92, L.95, K.100, V.112, W.115, R.116, P.123 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.22, A:F.22, A:L.95, A:W.115, A:R.116, A:P.123 Hydrogen bonds: A:R.90, A:K.100 Water bridges: A:N.188, A:R.191, A:R.191, A:R.191, A:R.191, A:R.191 pi-Stacking: A:F.22 Halogen bonds: A:E.19

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: W.68, R.83 Chain B: W.68, R.83 Ligand excluded by PLIP

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 7 residues within 4Å: Chain B: N.17, R.21, F.22, S.23, G.24, E.89, Y.92 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.17, B:S.23, B:G.24 Water bridges: B:S.14, B:S.23, B:R.62, B:R.62 Salt bridges: B:R.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, L. et al., Phosphoglycerate mutase 1 (PGAM1) complexed with its inhibitor PGMI-004A. To Be Published

Release Date

2018-08-08

Peptides

Phosphoglycerate mutase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Phosphoglycerate mutase 1

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