SMTL ID : 5y2m.1 (2 other biounits)

Crystal structure of a group 2 HA binding antibody AF4H1K1 Fab in complex with the H4N6 duck isolate (H4-CZ/56) hemagglutinin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.80 Å

Oligo State

hetero-3-3-mer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.162, T.164 Chain E: T.184, S.216 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:S.216, A:T.164 NAG.2: 3 residues within 4Å: Chain A: S.41, N.294, G.310 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.41 NAG.3: 4 residues within 4Å: Chain A: T.184, S.216 Chain C: N.162, T.164 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:T.164, A:S.216 NAG.4: 3 residues within 4Å: Chain C: S.41, N.294, G.310 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.41 NAG.5: 4 residues within 4Å: Chain C: T.184, S.216 Chain E: N.162, T.164 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:T.164, C:S.216 NAG.6: 3 residues within 4Å: Chain E: S.41, N.294, G.310 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:S.41, E:N.294

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiao, H. et al., An H3-clade neutralizing antibody screened from an H7N9 patient that binds group 2 influenza A hemagglutinins. To Be Published

Release Date

2019-02-13

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

E
C

B
D

D
E

F
F

Hemagglutinin

Hemagglutinin

Related Entries With Identical Sequence