SMTL ID : 5y2q.1

X-ray structure of acetylcholine binding protein (AChBP) complexed with a small molecule

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

homo-pentamer

Ligands

5 x 8L3: 3-[[4-[(3,4-dichlorophenyl)methyl]piperidin-4-yl]methoxy]pyridine(Non-covalent)

8L3.1: 13 residues within 4Å: Chain A: W.145, T.146, Y.187, C.189, C.190, Y.194 Chain B: K.36, W.55, Q.57, R.106, L.114, M.116, Y.166 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:R.106, B:L.114, A:Y.187, A:Y.187, A:Y.187, A:Y.194 Hydrogen bonds: B:M.116, A:Y.187 8L3.2: 13 residues within 4Å: Chain A: W.55, Q.57, R.106, L.114, M.116, Y.166 Chain E: Y.91, S.144, W.145, T.146, Y.187, C.189, Y.194 11 PLIP interactions: 6 interactions with chain E, 5 interactions with chain A Hydrophobic interactions: E:T.146, E:Y.187, E:Y.187, E:Y.194, E:Y.194, A:W.55, A:R.106, A:L.114, A:Y.166 Hydrogen bonds: E:Y.187, A:M.116 8L3.3: 13 residues within 4Å: Chain B: Y.91, S.144, W.145, T.146, Y.187, C.189, C.190, Y.194 Chain C: Q.57, R.106, L.114, M.116, Y.166 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:R.106, C:L.114, B:Y.187, B:Y.194 Water bridges: C:M.116 8L3.4: 15 residues within 4Å: Chain C: Y.91, S.144, W.145, T.146, Y.187, C.189, C.190, Y.194 Chain D: K.36, W.55, Q.57, R.106, L.114, M.116, Y.166 10 PLIP interactions: 3 interactions with chain D, 7 interactions with chain C Hydrophobic interactions: D:R.106, D:L.114, C:Y.187, C:Y.187, C:Y.187, C:Y.187, C:Y.194, C:Y.194 Hydrogen bonds: D:M.116, C:Y.187 8L3.5: 14 residues within 4Å: Chain D: Y.91, S.144, W.145, T.146, Y.187, C.189, C.190, Y.194 Chain E: K.36, W.55, Q.57, R.106, L.114, M.116 9 PLIP interactions: 4 interactions with chain D, 5 interactions with chain E Hydrophobic interactions: D:Y.187, D:Y.194, D:Y.194, E:W.55, E:W.55, E:R.106, E:L.114 Hydrogen bonds: D:Y.187, E:M.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, L.L. et al., X-ray structure of acetylcholine binding protein (AChBP) complexed with a small molecule. To Be Published

Release Date

2018-08-08

Peptides

Acetylcholine-binding protein: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
A

C
B

D
C

E
E

Acetylcholine-binding protein

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