SMTL ID : 5y2t.1

Structure of PPARgamma ligand binding domain - lobeglitazone complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x 8LX: (5S)-5-[[4-[2-[[6-(4-methoxyphenoxy)pyrimidin-4-yl]-methyl-amino]ethoxy]phenyl]methyl]-1,3-thiazolidine-2,4-dione(Non-covalent)

8LX.1: 19 residues within 4Å: Chain A: L.72, G.75, E.76, R.97, I.98, F.99, G.101, C.102, Q.103, S.106, H.140, Y.144, L.147, I.158, M.165, M.181, H.266, L.270, Y.290 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.72, A:Y.144, A:I.158 Hydrogen bonds: A:S.106, A:Y.290, A:Y.290 Water bridges: A:E.76, A:R.105, A:S.159, A:S.159 8LX.2: 21 residues within 4Å: Chain B: L.72, E.76, F.81, H.83, R.97, I.98, F.99, G.101, C.102, Q.103, S.106, H.140, I.143, Y.144, L.147, I.158, M.165, F.180, M.181, H.266, L.270 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.72, B:F.81, B:I.143, B:Y.144, B:I.158, B:I.158, B:F.180 Hydrogen bonds: B:R.97, B:S.106 Water bridges: B:S.159 pi-Stacking: B:H.266

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, M.A. et al., Structures of PPAR gamma complexed with lobeglitazone and pioglitazone reveal key determinants for the recognition of antidiabetic drugs. Sci Rep (2017)

Release Date

2017-12-20

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

Related Entries With Identical Sequence