SMTL ID : 5y2u.1

X-ray structure of Phosphoglycerate Mutase 1(PGAM1) complexed with a small molecule

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-dimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: W.68, R.83 Chain B: W.68, R.83 Ligand excluded by PLIP

2 x AZN: ALIZARIN RED(Non-covalent)

AZN.2: 8 residues within 4Å: Chain A: F.22, R.90, Y.92, L.95, K.100, V.112, W.115, R.116 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.92, A:L.95, A:W.115, A:R.116, A:R.116 Hydrogen bonds: A:R.90 Water bridges: A:N.188, A:R.191, A:R.191, A:R.191, A:R.191 Salt bridges: A:K.100, A:R.116 pi-Stacking: A:F.22 AZN.3: 7 residues within 4Å: Chain B: F.22, R.90, L.95, V.112, W.115, R.116 Ligands: MES.4 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.22, B:L.95, B:W.115, B:R.116 Hydrogen bonds: B:R.90, B:R.116 Water bridges: B:N.188 Salt bridges: B:R.116

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.4: 9 residues within 4Å: Chain B: N.17, R.21, F.22, S.23, G.24, R.62, E.89, Y.92 Ligands: AZN.3 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:N.17, B:S.23, B:G.24, B:Y.92 Water bridges: B:S.23, B:S.23, B:E.89, B:E.89 Salt bridges: B:R.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, L. et al., X-ray structure of Phosphoglycerate Mutase 1(PGAM1) complexed with a small molecule. To Be Published

Release Date

2018-08-08

Peptides

Phosphoglycerate mutase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Phosphoglycerate mutase 1

Related Entries With Identical Sequence