SMTL ID : 5y35.1

Phosphoglycerate mutase 1 complexed with a small molecule inhibitor KH1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

homo-dimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: W.68, R.83 Chain B: W.68, R.83 Ligand excluded by PLIP

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 9 residues within 4Å: Chain B: N.17, R.21, F.22, S.23, G.24, R.62, E.89, Y.92 Ligands: 8LF.3 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:N.17, B:S.23, B:G.24, B:E.89, B:Y.92 Water bridges: B:S.23, B:R.62, B:R.62 Salt bridges: B:R.62

1 x 8LF: ~{N}-[3,4-bis(oxidanyl)-9,10-bis(oxidanylidene)anthracen-2-yl]-4-methyl-benzenesulfonamide(Non-covalent)

8LF.3: 8 residues within 4Å: Chain B: N.20, R.21, F.22, R.90, K.100, W.115, R.116 Ligands: MES.2 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:F.22, B:F.22, B:K.100, B:K.100, B:W.115, B:R.116, B:R.116 Hydrogen bonds: B:R.116, B:R.116 Water bridges: B:R.191, B:R.191, B:N.209 pi-Cation interactions: B:R.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, L.L. et al., Phosphoglycerate mutase 1 complexed with a small molecule inhibitor KH1. To Be Published

Release Date

2018-08-08

Peptides

Phosphoglycerate mutase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Phosphoglycerate mutase 1

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