- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.63 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x AZA: 8-AZAXANTHINE(Non-covalent)
- 4 x OXY: OXYGEN MOLECULE(Non-covalent)
OXY.2: 6 residues within 4Å:- Chain A: I.248, N.275, G.301, Q.303
- Chain B: T.72
- Ligands: AZA.1
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:N.275, A:Q.303, B:T.72
- Water bridges: B:K.12
OXY.6: 7 residues within 4Å:- Chain A: T.72
- Chain B: I.248, N.275, G.301, F.302, Q.303
- Ligands: AZA.5
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:T.72, B:N.275, B:Q.303
- Water bridges: A:K.12, A:K.12
OXY.12: 6 residues within 4Å:- Chain C: I.248, N.275, G.301, Q.303
- Chain D: T.72
- Ligands: AZA.11
6 PLIP interactions:3 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:N.275, C:G.301, C:Q.303, D:T.72
- Water bridges: D:K.12, D:D.73
OXY.19: 6 residues within 4Å:- Chain C: T.72
- Chain D: I.248, N.275, G.301, Q.303
- Ligands: AZA.18
6 PLIP interactions:3 interactions with chain D, 3 interactions with chain C- Hydrogen bonds: D:N.275, D:G.301, D:Q.303, C:T.72
- Water bridges: C:K.12, C:K.12
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 2 residues within 4Å:- Chain A: R.297
- Chain C: R.297
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Salt bridges: A:R.297, C:R.297
SO4.20: 2 residues within 4Å:- Chain B: R.297
- Chain D: R.297
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain D- Salt bridges: B:R.297, D:R.297
- Water bridges: D:R.297
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 10 residues within 4Å:- Chain A: R.39, E.118, P.120, E.145, Y.146, A.147, L.170, A.229, E.230, R.233
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:A.147, A:E.230, A:R.233, A:R.233
EDO.7: 11 residues within 4Å:- Chain B: R.39, E.118, P.120, E.145, Y.146, A.147, L.170, A.229, E.230, R.233
- Ligands: EDO.10
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:A.147, B:E.230, B:R.233, B:R.233
EDO.8: 5 residues within 4Å:- Chain A: Y.9
- Chain B: Q.274, Y.300, F.302, C.304
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.274, B:Y.300
EDO.9: 6 residues within 4Å:- Chain B: D.40, H.41, I.42, L.43, F.121, F.139
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:H.41, B:I.42, B:L.43, B:F.121
- Water bridges: B:D.40, B:F.121
EDO.10: 9 residues within 4Å:- Chain B: P.120, F.121, E.122, S.142, N.144, E.145, R.233
- Chain C: K.140
- Ligands: EDO.7
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.142, B:N.144
- Water bridges: B:F.121, B:F.121
EDO.13: 11 residues within 4Å:- Chain C: R.39, E.118, P.120, E.145, Y.146, A.147, L.170, A.229, E.230, R.233
- Ligands: EDO.14
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:A.147, C:E.230, C:R.233, C:R.233
EDO.14: 9 residues within 4Å:- Chain B: K.140
- Chain C: P.120, F.121, E.122, S.142, N.144, E.145, R.233
- Ligands: EDO.13
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:E.122, C:S.142, C:N.144, C:E.145
- Water bridges: C:F.121, C:F.121
EDO.15: 6 residues within 4Å:- Chain C: D.40, H.41, I.42, L.43, F.121, F.139
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:H.41, C:I.42, C:L.43, C:F.121
- Water bridges: C:D.40, C:F.121
EDO.16: 6 residues within 4Å:- Chain C: Y.9, K.49
- Chain D: Q.274, Y.300, F.302, C.304
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:K.49, D:Q.274, D:Y.300
- Water bridges: C:Y.9, C:Y.9
EDO.17: 6 residues within 4Å:- Chain D: D.40, H.41, I.42, L.43, F.121, F.139
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:H.41, D:I.42, D:L.43, D:F.121
- Water bridges: D:D.40
EDO.21: 10 residues within 4Å:- Chain D: R.39, E.118, P.120, E.145, Y.146, A.147, L.170, A.229, E.230, R.233
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:A.147, D:E.230, D:R.233, D:R.233
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hibi, T. et al., Conformational Flexibility of Plastic Interface Loop Allows Entropic Adaptation of Urate Oxidase to Environmental pH. To Be Published
- Release Date
- 2018-08-08
- Peptides
- Uric acid degradation bifunctional protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.63 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x AZA: 8-AZAXANTHINE(Non-covalent)
- 4 x OXY: OXYGEN MOLECULE(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hibi, T. et al., Conformational Flexibility of Plastic Interface Loop Allows Entropic Adaptation of Urate Oxidase to Environmental pH. To Be Published
- Release Date
- 2018-08-08
- Peptides
- Uric acid degradation bifunctional protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D