SMTL ID : 5y56.1

Fc mutant (K392D/K409D/D399K)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- MAN- NDG- GAL- BMA- NAG- FUL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-beta-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NDG-GAL-BMA-NAG-FUL.1: 15 residues within 4Å: Chain A: F.6, F.8, P.9, P.10, K.11, D.14, E.23, T.25, V.27, V.29, D.30, Q.60, Y.61, N.62, R.66 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.61 Hydrogen bonds: A:K.11, A:D.14, A:E.23, A:E.23, A:E.23, A:T.25, A:K.11, A:R.66 Water bridges: A:K.11, A:K.11

1 x NAG- NAG- BMA- MAN- NDG- GAL- BMA: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[beta-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NDG-GAL-BMA.2: 14 residues within 4Å: Chain B: F.6, F.8, P.9, P.10, K.11, D.14, E.23, T.25, V.27, V.29, D.30, Q.60, N.62, R.66 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.11, B:E.23, B:E.23, B:T.25 Hydrophobic interactions: B:V.27, B:V.29 Water bridges: B:R.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, J. et al., A rational approach to enhancing antibody Fc homodimer formation for robust production of antibody mixture in a single cell line. J. Biol. Chem. (2017)

Release Date

2017-09-13

Peptides

Immunoglobulin gamma-1 heavy chain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Immunoglobulin gamma-1 heavy chain