SMTL ID : 5y5n.1

Crystal structure of human Sirtuin 2 in complex with a selective inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.164, C.169, C.190, C.193 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.164, A:C.169, A:C.190, A:C.193

1 x 8NO: 2-[[3-(2-phenylethoxy)phenyl]amino]benzamide(Non-covalent)

8NO.2: 15 residues within 4Å: Chain A: D.64, F.65, R.66, F.88, F.100, A.104, P.109, F.112, I.138, H.156, F.159, I.201, V.202, F.203, F.204 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.65, A:F.88, A:F.88, A:F.100, A:F.112, A:F.159, A:F.159, A:F.159, A:I.201, A:F.204 Hydrogen bonds: A:F.65, A:H.156 Water bridges: A:R.66, A:R.66 pi-Stacking: A:F.88, A:F.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mellini, P. et al., Potent mechanism-based sirtuin-2-selective inhibition by anin situ-generated occupant of the substrate-binding site, "selectivity pocket" and NAD+-binding site. Chem Sci (2017)

Release Date

2017-09-06

Peptides

NAD-dependent protein deacetylase sirtuin-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-dependent protein deacetylase sirtuin-2