SMTL ID : 5y5r.6 (5 other biounits)

Crystal structure of a novel Pyrethroid Hydrolase PytH with BIF

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 8NL: (2-methyl-3-phenyl-phenyl)methyl (1~{S})-3-[(~{E})-2-chloranyl-3,3,3-tris(fluoranyl)prop-1-enyl]-2,2-dimethyl-cyclopropane-1-carboxylate(Non-covalent)

8NL.1: 17 residues within 4Å: Chain A: G.11, A.12, L.13, N.14, S.78, L.79, V.116, T.125, A.128, I.132, A.143, L.151, F.155, M.156, F.170, F.179, H.230 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:A.12, A:L.13, A:L.13, A:L.79, A:A.143, A:L.151, A:F.155, A:F.155, A:F.170, A:F.170 Hydrogen bonds: A:A.12, A:S.78, A:L.79 Salt bridges: A:H.77, A:H.230 Halogen bonds: A:T.125

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: S.235, M.236, P.237, E.238, R.239 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.238, A:R.239 Salt bridges: A:R.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, D.Q. et al., Structure and Catalytic Mechanism of a Novel Pyrethroid Hydrolase from Sphingobium faniae JZ-2. To Be Published

Release Date

2018-08-15

Peptides

Pyrethroid hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

Pyrethroid hydrolase

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