SMTL ID : 5y65.1

Phosphoglycerate mutase 1 complexed with a small molecule inhibitor KH2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: W.68, R.83 Chain B: W.68, R.83 Ligand excluded by PLIP

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 10 residues within 4Å: Chain B: H.11, N.17, R.21, F.22, S.23, G.24, R.62, E.89, Y.92 Ligands: HKB.3 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.17, B:S.23, B:G.24, B:E.89 Water bridges: B:N.188 Salt bridges: B:R.62

1 x HKB: ~{N}-[3,4-bis(oxidanyl)-9,10-bis(oxidanylidene)anthracen-2-yl]-4-(dimethylamino)benzenesulfonamide(Non-covalent)

HKB.3: 11 residues within 4Å: Chain B: N.17, N.20, R.21, F.22, R.90, Y.92, K.100, V.112, W.115, R.116 Ligands: MES.2 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.22, B:Y.92, B:W.115, B:R.116 Hydrogen bonds: B:R.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, L.L. et al., Phosphoglycerate mutase 1 complexed with a small molecule inhibitor KH2. To Be Published

Release Date

2018-12-05

Peptides

Phosphoglycerate mutase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Phosphoglycerate mutase 1

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