SMTL ID : 5y6m.1

Zika virus helicase in complex with ADP-AlF3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: T.22, E.107 Ligands: ADP.2, AF3.3 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.22, H2O.1, H2O.2, H2O.3

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 11 residues within 4Å: Chain A: H.16, G.18, A.19, G.20, K.21, T.22, R.23, N.151, R.283 Ligands: MN.1, AF3.3 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:G.18, A:G.18, A:G.20, A:K.21, A:T.22, A:R.23, A:R.23, A:R.23, A:N.151, A:R.283, A:R.283 Water bridges: A:K.21, A:R.280 Salt bridges: A:K.21, A:R.283 pi-Cation interactions: A:R.23, A:R.23

1 x AF3: ALUMINUM FLUORIDE(Non-covalent)

AF3.3: 10 residues within 4Å: Chain A: P.17, G.18, K.21, E.107, A.138, Q.276, R.280, R.283 Ligands: MN.1, ADP.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, X. et al., Mechanism of ATP hydrolysis by the Zika virus helicase. FASEB J. (2018)

Release Date

2018-07-04

Peptides

Helicase domain from Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Helicase domain from Genome polyprotein

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