SMTL ID : 5y6z.1 (1 other biounit)

Crystal structure of the coxsackievirus A16 polymerase elongation complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: R.163, K.167, R.174 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.174 Water bridges: A:G.236 Salt bridges: A:R.163, A:K.167 PO4.3: 3 residues within 4Å: Chain B: G.27, U.28 Chain C: G.9 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.413 PO4.5: 2 residues within 4Å: Chain C: G.9, A.10 No protein-ligand interaction detected (PLIP)

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: H.68, E.69, R.247, L.284 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.247, A:R.247 GOL.4: 7 residues within 4Å: Chain A: K.159, R.174, L.175, I.176, S.289 Chain B: G.20 Chain C: A.14 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.175, A:S.289 GOL.6: 8 residues within 4Å: Chain A: L.25, L.162, S.401, W.404, K.406, H.414 Chain C: G.11, A.12 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.404, A:K.406, A:K.406

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bi, P. et al., Crystal structure of the coxsackievirus A16 RNA-dependent RNA polymerase elongation complex reveals novel features in motif A dynamics. Virol Sin (2017)

Release Date

2017-12-27

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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