SMTL ID : 5y7h.1

Crystal structure of human DPP4 in complex with inhibitor3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

4 x 8O3: (R)-4-(3-amino-4-(2,4,5-trifluorophenyl)butanoyl)piperazin-2-one(Non-covalent)

8O3.1: 15 residues within 4Å: Chain A: R.87, E.167, E.168, S.171, F.319, Y.509, S.592, Y.593, V.618, Y.624, Y.628, N.672, V.673, H.702 Ligands: 8O3.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.673 Hydrogen bonds: A:E.167, A:E.167, A:S.171, A:Y.624 pi-Stacking: A:Y.624, A:Y.628 8O3.2: 7 residues within 4Å: Chain A: R.87, H.88, S.171, Y.509, K.516, W.591 Ligands: 8O3.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.87 8O3.3: 5 residues within 4Å: Chain B: R.87, Y.509, W.591, S.592 Ligands: 8O3.4 1 PLIP interactions: 1 interactions with chain B Halogen bonds: B:R.87 8O3.4: 15 residues within 4Å: Chain B: R.87, E.167, E.168, S.171, F.319, Y.509, S.592, Y.593, V.618, Y.624, Y.628, N.672, V.673, H.702 Ligands: 8O3.3 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.167, B:S.171 pi-Stacking: B:Y.624, B:Y.628

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, H.K. et al., Unique binding mode of Evogliptin with human dipeptidyl peptidase IV. Biochem.Biophys.Res.Commun. (2017)

Release Date

2019-03-20

Peptides

Dipeptidyl peptidase 4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dipeptidyl peptidase 4

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