SMTL ID : 5y86.1

Crystal structure of kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x HRM: 7-METHOXY-1-METHYL-9H-BETA-CARBOLINE(Non-covalent)

HRM.1: 13 residues within 4Å: Chain A: F.220, V.223, A.236, K.238, I.272, F.288, E.289, L.290, L.291, S.292, L.342, I.354, D.355 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.220, A:V.223, A:A.236, A:I.272, A:F.288, A:F.288, A:I.354, A:I.354 Hydrogen bonds: A:L.291, A:D.355

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 3 residues within 4Å: Chain A: G.218, S.219, K.337 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.219 Water bridges: A:F.220, A:K.337, A:K.337 Salt bridges: A:K.337 PO4.3: 3 residues within 4Å: Chain A: R.313, K.314, K.524 10 PLIP interactions: 10 interactions with chain A Water bridges: A:R.313, A:R.313, A:R.313, A:R.313, A:R.313, A:Q.317, A:K.524 Salt bridges: A:R.313, A:K.314, A:K.524

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 1 residues within 4Å: Chain A: R.178 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.178, A:R.178 EDO.5: 3 residues within 4Å: Chain A: Y.369, Q.371, R.376 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.376 EDO.6: 4 residues within 4Å: Chain A: P.520, S.523, K.524, S.525 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.523, A:S.525 EDO.7: 2 residues within 4Å: Chain A: R.208, F.278 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.208 EDO.8: 2 residues within 4Å: Chain A: S.308, V.309 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.309 Water bridges: A:F.307 EDO.9: 5 residues within 4Å: Chain A: F.315, L.343, H.346, G.347, R.348 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.346, A:G.347 EDO.10: 3 residues within 4Å: Chain A: R.450, C.452, S.453 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.452 EDO.11: 3 residues within 4Å: Chain A: Y.296, E.297, K.300 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.297

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.12: 5 residues within 4Å: Chain A: A.156, Y.157, G.180, V.181, I.182 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.180, A:I.182 Water bridges: A:Y.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, K. et al., Crystal Structure of Human Dual-Specificity Tyrosine-Regulated Kinase 3 Reveals New Structural Features and Insights into its Auto-phosphorylation. J. Mol. Biol. (2018)

Release Date

2018-05-02

Peptides

Dual specificity tyrosine-phosphorylation-regulated kinase 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dual specificity tyrosine-phosphorylation-regulated kinase 3