SMTL ID : 5y8c.1

Crystal Structure Analysis of the BRD4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 6 residues within 4Å: Chain A: H.7, H.8, H.9, H.10, L.11, V.12 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.8, A:H.9, A:H.10, A:L.11, A:V.12 NO3.2: 3 residues within 4Å: Chain A: K.28, P.29, K.30 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.28, A:K.30, A:K.30

1 x 8P9: 5-chloranyl-2-methoxy-N-(6-methoxy-3-methyl-1,2-benzoxazol-5-yl)benzenesulfonamide(Non-covalent)

8P9.3: 9 residues within 4Å: Chain A: W.54, P.55, V.60, L.65, L.67, Y.112, N.113, I.119, M.122 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.54, A:V.60, A:L.65 Hydrogen bonds: A:N.113

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: I.73, I.74, K.75, T.76, N.108 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.73, A:K.75, A:T.76, A:T.76 EDO.5: 3 residues within 4Å: Chain A: R.31, W.93, N.94 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.31, A:R.31, A:N.94

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 4 residues within 4Å: Chain A: Y.38, V.42, K.133, E.136 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.38, A:K.133, A:K.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, M. et al., Structure-Based Discovery and Optimization of Benzo[ d]isoxazole Derivatives as Potent and Selective BET Inhibitors for Potential Treatment of Castration-Resistant Prostate Cancer (CRPC). J. Med. Chem. (2018)

Release Date

2018-06-13

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4