SMTL ID : 5yaa.3 (3 other biounits)

Crystal structure of Marf1 NYN domain from Mus musculus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: A.105, G.130 Ligands: GOL.3 No protein-ligand interaction detected (PLIP) GOL.2: 7 residues within 4Å: Chain A: K.43, F.44, R.46, H.48, I.134 Ligands: GOL.5, GOL.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.44, A:R.46 Water bridges: A:R.46 GOL.3: 3 residues within 4Å: Chain A: R.126, N.150 Ligands: GOL.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.126, A:R.126, A:N.150 GOL.4: 4 residues within 4Å: Chain A: R.126, H.127, H.147, H.148 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.126, A:R.126, A:H.127, A:H.148 GOL.5: 3 residues within 4Å: Chain A: H.132, Q.151 Ligands: GOL.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.151 GOL.6: 3 residues within 4Å: Chain A: R.46, G.47 Ligands: GOL.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yao, Q. et al., Ribonuclease activity of MARF1 controls oocyte RNA homeostasis and genome integrity in mice. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-10-03

Peptides

Meiosis regulator and mRNA stability factor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Meiosis regulator and mRNA stability factor 1

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