SMTL ID : 5yad.1

Crystal structure of Marf1 Lotus domain from Mus musculus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: G.65, R.66 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.66 Salt bridges: A:R.66 Water bridges: B:R.66 SO4.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.4: 3 residues within 4Å: Chain B: L.30, G.65, R.66 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Water bridges: A:R.66, B:R.66 Hydrogen bonds: B:R.66 Salt bridges: B:R.66

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: N.46, S.48 Chain B: I.59, R.60, E.61 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.60, B:E.61, A:N.46, A:S.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yao, Q. et al., Ribonuclease activity of MARF1 controls oocyte RNA homeostasis and genome integrity in mice. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-10-03

Peptides

Meiosis regulator and mRNA stability factor 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Meiosis regulator and mRNA stability factor 1