SMTL ID : 5yc3.1

Crystal structure of AL3 PHD finger bound to H3K4me2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x ALA- ARG- THR- MLY- GLN- THR- ALA- ARG- LYS: H3K4me2(Non-covalent)

ALA-ARG-THR-MLY-GLN-THR-ALA-ARG-LYS.1: 14 residues within 4Å: Chain A: T.10, D.19, G.20, A.21, D.22, E.23, F.24, W.25, I.26, C.27, W.34, I.50, K.51, Y.53 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:A.21, A:F.24, A:W.25, A:I.26, A:W.34, A:W.34, A:I.50 Hydrogen bonds: A:G.20, A:D.22, A:D.22, A:D.22, A:E.23, A:E.23, A:W.25, A:W.25, A:C.27, A:I.50 Water bridges: A:D.29, A:D.29, A:D.29, A:W.34, A:K.51 Salt bridges: A:D.19, A:D.22

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.12, C.15, H.36, C.39 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.12, A:C.15, A:H.36, A:C.39 ZN.3: 4 residues within 4Å: Chain A: C.28, C.31, C.55, C.58 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.28, A:C.31, A:C.55, A:C.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, S. et al., Systematic Profiling of Histone Readers in Arabidopsis thaliana. Cell Rep (2018)

Release Date

2018-01-24

Peptides

PHD finger protein ALFIN-LIKE 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PHD finger protein ALFIN-LIKE 3

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