SMTL ID : 5yc6.1

The crystal structure of uPA in complex with 4-Bromobenzylamirne at pH4.6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.18 Å

Oligo State

monomer

Ligands

1 x PZH: 1-(4-BROMOPHENYL)METHANAMINE(Non-covalent)

PZH.1: 12 residues within 4Å: Chain A: D.192, S.193, C.194, Q.195, S.198, V.216, W.218, G.219, G.221, C.222, G.229 Ligands: SO4.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.216 Water bridges: A:Q.195, A:G.219, A:G.219

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: H.46, Q.195, G.196, S.198 Ligands: PZH.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.196, A:D.197, A:S.198, A:S.198 Water bridges: A:V.30, A:V.30, A:H.46, A:S.198 Salt bridges: A:H.46

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 8 residues within 4Å: Chain A: G.132, K.160, L.161, I.162, A.185, D.186, P.187, W.189 No protein-ligand interaction detected (PLIP) PGE.4: 2 residues within 4Å: Chain A: V.27, N.67 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, L.G. et al., Halogen bonding for the design of inhibitors by targeting the S1 pocket of serine proteases. Rsc Adv (2018)

Release Date

2018-10-03

Peptides

Urokinase-type plasminogen activator: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
U

Urokinase-type plasminogen activator

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