SMTL ID : 5yc7.1

The crystal structure of uPA in complex with 4-Bromobenzylamirne at pH7.4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x PZH: 1-(4-BROMOPHENYL)METHANAMINE(Non-covalent)

PZH.1: 12 residues within 4Å: Chain A: D.192, S.193, C.194, Q.195, S.198, S.217, W.218, G.219, G.221, C.222, G.229 Ligands: SO4.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.198 Halogen bonds: A:D.192

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain A: C.31, H.46, C.47, Q.195, G.196, D.197, S.198 Ligands: PZH.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.196, A:S.198, A:S.198, A:S.198 Salt bridges: A:H.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, L.G. et al., Halogen bonding for the design of inhibitors by targeting the S1 pocket of serine proteases. Rsc Adv (2018)

Release Date

2018-10-03

Peptides

Urokinase-type plasminogen activator: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
U

Urokinase-type plasminogen activator

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