SMTL ID : 5ycb.1 (1 other biounit)

Crystal structure of notothenia coriiceps adenylate kinase variant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

monomer

Ligands

1 x AP5: BIS(ADENOSINE)-5'-PENTAPHOSPHATE(Non-covalent)

AP5.1: 31 residues within 4Å: Chain A: G.16, P.17, G.18, S.19, G.20, K.21, G.22, T.23, S.39, G.40, L.43, R.44, M.61, E.65, L.66, V.67, V.72, G.94, Y.95, R.97, Q.101, R.128, L.129, R.132, R.138, R.149, S.175, L.177, P.178, V.179, V.182 35 PLIP interactions: 35 interactions with chain A Hydrogen bonds: A:G.18, A:S.19, A:G.20, A:K.21, A:G.22, A:T.23, A:S.39, A:V.67, A:R.97, A:Q.101, A:Q.101, A:R.128, A:R.132, A:R.149, A:L.177 Water bridges: A:G.40, A:G.40, A:M.61, A:R.97, A:R.97, A:D.140 Salt bridges: A:K.21, A:K.21, A:K.21, A:R.44, A:R.97, A:R.97, A:R.132, A:R.138, A:R.138, A:R.138, A:R.149 pi-Cation interactions: A:R.97, A:R.128, A:R.128

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: P.68, L.69, E.98 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.69, A:E.98 Water bridges: A:D.70 Salt bridges: A:K.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bae, E. et al., Crystal structure of notothenia coriiceps adenylate kinase variant. To Be Published

Release Date

2018-09-12

Peptides

adenylate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

adenylate kinase

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