SMTL ID : 5ych.1

Ancestral myoglobin aMbWb of Basilosaurus relative (monophyly)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 17 residues within 4Å: Chain A: T.40, K.43, F.44, K.46, H.65, T.68, V.69, A.72, L.90, S.93, H.94, H.98, I.100, Y.104, L.105, I.108, F.139 25 PLIP interactions: 24 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:T.40, A:F.44, A:F.44, A:F.44, A:F.44, A:T.68, A:V.69, A:A.72, A:L.90, A:L.90, A:I.100, A:Y.104, A:I.108, A:I.108, A:F.139 Hydrogen bonds: A:S.93 Water bridges: A:K.46, A:K.46, A:H.98 Salt bridges: A:K.46, A:H.94, A:H.98 pi-Stacking: A:H.98 Metal complexes: A:H.94, H2O.2

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: K.35, T.52, E.53 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.53 Water bridges: A:K.35, A:T.52, A:E.53, A:A.54 Salt bridges: A:K.35 SO4.3: 1 residues within 4Å: Chain A: H.117 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Isogai, Y. et al., Tracing whale myoglobin evolution by resurrecting ancient proteins. Sci Rep (2018)

Release Date

2018-09-19

Peptides

Ancestral myoglobin aMbWb of Basilosaurus relative (monophyly): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ancestral myoglobin aMbWb of Basilosaurus relative (monophyly)