SMTL ID : 5yck.1

Crystal structure of a MATE family protein derived from Camelina sativa at 2.3 angstrom

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

2 x RB: RUBIDIUM ION(Non-covalent)

RB.1: 1 residues within 4Å: Chain A: E.251 No protein-ligand interaction detected (PLIP) RB.2: 1 residues within 4Å: Chain A: E.282 No protein-ligand interaction detected (PLIP)

3 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.3: 5 residues within 4Å: Chain A: W.384, I.387, F.394, Q.445, K.448 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.387, A:F.394, A:F.394, A:F.394 Hydrogen bonds: A:K.448, A:K.448 OLC.4: 12 residues within 4Å: Chain A: L.54, F.58, V.61, T.62, I.66, I.107, I.108, I.111, L.119, L.122, W.253 Ligands: OLC.5 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.58, A:T.62, A:I.66, A:I.107, A:I.108, A:I.111, A:W.253 OLC.5: 11 residues within 4Å: Chain A: S.57, A.246, L.250, W.253, E.256, L.257, I.259, L.260, I.393, Y.397 Ligands: OLC.4 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.246, A:W.253, A:W.253, A:W.253, A:L.257, A:L.257, A:L.260, A:I.393, A:Y.397 Hydrogen bonds: A:E.256, A:E.256 Water bridges: A:S.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanaka, Y. et al., Crystal Structure of a Plant Multidrug and Toxic Compound Extrusion Family Protein. Structure (2017)

Release Date

2017-09-27

Peptides

multi drug efflux transporter: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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multi drug efflux transporter