SMTL ID : 5ycs.1

X-Ray Structure of Enoyl-Acyl Carrier Protein Reductase from Bacillus Anthracis with triclosan

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 27 residues within 4Å: Chain A: G.15, V.16, A.17, S.21, I.22, A.42, L.46, C.67, D.68, V.69, T.70, C.95, I.96, A.97, I.122, L.147, T.148, Y.149, K.166, A.192, G.193, P.194, I.195, T.197, L.198, S.199 Ligands: TCL.2 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:I.22, A:Y.149, A:Y.149, A:A.192 Hydrogen bonds: A:G.15, A:S.21, A:I.22, A:D.68, A:D.68, A:V.69, A:I.96, A:A.97, A:K.166, A:I.195, A:I.195, A:S.199 Water bridges: A:A.23, A:A.42, A:I.96 NAD.4: 27 residues within 4Å: Chain B: G.15, V.16, A.17, S.21, I.22, A.42, L.46, C.67, D.68, V.69, T.70, C.95, I.96, A.97, I.122, L.147, T.148, Y.149, K.166, A.192, G.193, P.194, I.195, T.197, L.198, S.199 Ligands: TCL.5 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:I.22, B:Y.149, B:A.192 Hydrogen bonds: B:G.15, B:S.21, B:I.22, B:D.68, B:D.68, B:V.69, B:I.96, B:A.97, B:K.166, B:I.195, B:I.195, B:S.199 Water bridges: B:A.23, B:A.42, B:I.96 NAD.6: 27 residues within 4Å: Chain C: G.15, V.16, A.17, S.21, I.22, A.42, L.46, C.67, D.68, V.69, T.70, C.95, I.96, A.97, I.122, L.147, T.148, Y.149, K.166, A.192, G.193, P.194, I.195, T.197, L.198, S.199 Ligands: TCL.7 21 PLIP interactions: 21 interactions with chain C Hydrophobic interactions: C:I.22, C:Y.149, C:A.192 Hydrogen bonds: C:G.15, C:S.21, C:I.22, C:D.68, C:V.69, C:I.96, C:A.97, C:K.166, C:I.195, C:I.195, C:T.197, C:S.199 Water bridges: C:G.15, C:A.23, C:A.42, C:I.96, C:L.198, C:S.199 NAD.9: 27 residues within 4Å: Chain D: G.15, V.16, A.17, S.21, I.22, A.42, L.46, C.67, D.68, V.69, T.70, C.95, I.96, A.97, I.122, L.147, T.148, Y.149, K.166, A.192, G.193, P.194, I.195, T.197, L.198, S.199 Ligands: TCL.10 20 PLIP interactions: 20 interactions with chain D Hydrophobic interactions: D:I.22, D:Y.149, D:A.192 Hydrogen bonds: D:G.15, D:S.21, D:I.22, D:D.68, D:V.69, D:I.96, D:A.97, D:K.166, D:I.195, D:I.195, D:T.197, D:S.199 Water bridges: D:A.23, D:A.42, D:I.96, D:L.198, D:S.199

4 x TCL: TRICLOSAN(Non-covalent)

TCL.2: 11 residues within 4Å: Chain A: A.97, A.99, L.104, Y.149, Y.159, M.162, K.166, S.199, A.200, F.206 Ligands: NAD.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.104, A:Y.159 Hydrogen bonds: A:Y.159, A:Y.159 pi-Stacking: A:Y.149 Halogen bonds: A:A.99 TCL.5: 11 residues within 4Å: Chain B: A.97, F.98, A.99, L.104, Y.149, Y.159, M.162, S.199, A.200, F.206 Ligands: NAD.4 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.159, B:F.206 Hydrogen bonds: B:Y.159, B:Y.159 pi-Stacking: B:Y.149 Halogen bonds: B:A.99 TCL.7: 10 residues within 4Å: Chain C: A.97, A.99, L.104, Y.149, Y.159, M.162, S.199, A.200, F.206 Ligands: NAD.6 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:L.104, C:Y.159 Hydrogen bonds: C:Y.159 pi-Stacking: C:Y.149 Halogen bonds: C:A.99 TCL.10: 12 residues within 4Å: Chain D: A.97, F.98, A.99, L.104, Y.149, Y.159, M.162, K.166, S.199, A.200, F.206 Ligands: NAD.9 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:L.104, D:Y.159 Hydrogen bonds: D:Y.159 pi-Stacking: D:Y.149 Halogen bonds: D:A.99

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: R.28, N.32 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.32 Water bridges: A:R.28, A:N.32 Salt bridges: A:R.28 SO4.8: 4 residues within 4Å: Chain B: R.241 Chain C: T.224, E.226, E.227 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:T.224 Salt bridges: B:R.241

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, H.T. et al., Structural insights into the dimer-tetramer transition of FabI from Bacillus anthracis. Biochem. Biophys. Res. Commun. (2017)

Release Date

2018-02-21

Peptides

Enoyl-[acyl-carrier-protein] reductase [NADH] FabI: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Enoyl-[acyl-carrier-protein] reductase [NADH] FabI

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