SMTL ID : 5ydb.1

Crystal structure of the complex of type II dehydroquinate dehydratase from Acinetobacter baumannii with dehydroquinic acid at 1.76 Angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-tetramer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: H.105, V.123, C.125 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.105 NA.3: 2 residues within 4Å: Chain B: H.105, C.125 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.105 NA.5: 4 residues within 4Å: Chain C: V.104, H.105, V.123, C.125 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.105 NA.7: 3 residues within 4Å: Chain D: V.104, H.105, C.125 No protein-ligand interaction detected (PLIP)

4 x DQA: 1,3,4-TRIHYDROXY-5-OXO-CYCLOHEXANECARBOXYLIC ACID(Non-covalent)

DQA.2: 9 residues within 4Å: Chain A: N.74, A.76, A.77, H.80, H.100, L.101, S.102, V.104, R.111 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:A.76, A:V.104 Hydrogen bonds: A:N.74, A:N.74, A:A.76, A:A.76, A:H.80, A:H.100, A:L.101, A:S.102, A:R.111 Water bridges: A:A.77, A:A.77 Salt bridges: A:H.100 DQA.4: 10 residues within 4Å: Chain B: N.74, A.76, A.77, H.80, H.100, L.101, S.102, V.104, R.107, R.111 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:A.76, B:V.104 Hydrogen bonds: B:N.74, B:A.76, B:A.76, B:A.77, B:H.80, B:L.101, B:S.102, B:S.102, B:R.111 Salt bridges: B:H.100 DQA.6: 11 residues within 4Å: Chain B: V.83, D.87 Chain C: N.74, A.76, A.77, H.80, H.100, L.101, S.102, V.104, R.111 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:V.104 Hydrogen bonds: C:N.74, C:A.76, C:A.76, C:H.80, C:H.100, C:L.101, C:S.102, C:S.102, C:R.111 Water bridges: C:A.77 Salt bridges: C:H.100 DQA.8: 10 residues within 4Å: Chain D: N.74, A.76, A.77, H.80, H.100, L.101, S.102, V.104, R.107, R.111 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:V.104 Hydrogen bonds: D:N.74, D:N.74, D:A.76, D:A.77, D:L.101, D:S.102, D:R.111 Salt bridges: D:H.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iqbal, N. et al., Crystal structure of the complex of type II dehydroquinate dehydratase from Acinetobacter baumannii with dehydroquinic acid at 1.76 Angstrom resolution. To Be Published

Release Date

2017-09-20

Peptides

3-dehydroquinate dehydratase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

3-dehydroquinate dehydratase