SMTL ID : 5ydd.1

Crystal structure of C-terminal domain of Rv1828 from Mycobacterium tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain B: R.78, H.79 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.78, B:H.79

1 x 8TU: (6R,8S,9S)-8-(hydroxymethyl)-6,11,11-tris(oxidanyl)-9-propyl-dodecanoic acid(Non-covalent)

8TU.2: 8 residues within 4Å: Chain A: K.133, R.137 Chain B: H.59, R.118, A.121, A.122, I.125 Ligands: GOL.3 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:R.137 Hydrogen bonds: B:R.118

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain B: R.118 Ligands: 8TU.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.115

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 5 residues within 4Å: Chain B: G.51, P.52, G.53, G.54, F.55 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.51, B:G.51, B:G.53, B:F.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, S. et al., Characteristics of the essential pathogenicity factor Rv1828, a MerR family transcription regulator from Mycobacterium tuberculosis. FEBS J. (2018)

Release Date

2018-09-19

Peptides

Uncharacterized HTH-type transcriptional regulator Rv1828: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized HTH-type transcriptional regulator Rv1828

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