SMTL ID : 5ydr.1

Structure of DNMT1 RFTS domain in complex with ubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-1-mer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain A: A.1, H.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.1, A:H.2 Salt bridges: A:H.2 PO4.3: 2 residues within 4Å: Chain B: H.21, N.108 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.108 Salt bridges: B:H.21

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: C.4, C.7, C.65, H.69 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.4, B:C.7, B:C.65, B:H.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, T. et al., Structural and mechanistic insights into UHRF1-mediated DNMT1 activation in the maintenance DNA methylation. Nucleic Acids Res. (2018)

Release Date

2018-02-21

Peptides

Polyubiquitin-B: AC
DNA (cytosine-5)-methyltransferase 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
D

B
B

Polyubiquitin-B

DNA (cytosine-5)-methyltransferase 1