SMTL ID : 5ye5.1

structure of endo-lysosomal TRPML1 channel inserting into nanodisc

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: R.168, N.230 No protein-ligand interaction detected (PLIP) NAG.2: 2 residues within 4Å: Chain A: A.158, N.159 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.159 NAG.3: 2 residues within 4Å: Chain B: R.168, N.230 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain B: A.158, N.159 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:N.159 NAG.5: 2 residues within 4Å: Chain C: R.168, N.230 No protein-ligand interaction detected (PLIP) NAG.6: 2 residues within 4Å: Chain C: A.158, N.159 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:N.159 NAG.7: 2 residues within 4Å: Chain D: R.168, N.230 No protein-ligand interaction detected (PLIP) NAG.8: 2 residues within 4Å: Chain D: A.158, N.159 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:N.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, S. et al., Cryo-EM structures of the mammalian endo-lysosomal TRPML1 channel elucidate the combined regulation mechanism. Protein Cell (2017)

Release Date

2017-11-15

Peptides

mammalian endo-lysosomal TRPML1 channel: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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mammalian endo-lysosomal TRPML1 channel

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