SMTL ID : 5yeh.2 (1 other biounit)

Crystal structure of CTCF ZFs4-8-eCBS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

monomer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.5, C.8, H.21, H.25 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.5, A:H.21, A:H.25, H2O.1 ZN.2: 4 residues within 4Å: Chain A: C.33, C.36, H.49, H.53 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.33, A:C.36, A:H.49, A:H.53 ZN.3: 4 residues within 4Å: Chain A: C.61, C.64, H.77, H.82 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.61, A:C.64, A:H.77, A:H.82 ZN.4: 4 residues within 4Å: Chain A: C.91, C.94, H.107, H.112 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.91, A:C.94, A:H.107, A:H.112 ZN.5: 4 residues within 4Å: Chain A: C.121, Y.123, C.124, H.137 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.121, A:C.124, A:H.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, M. et al., Molecular mechanism of directional CTCF recognition of a diverse range of genomic sites. Cell Res. (2017)

Release Date

2017-11-29

Peptides

Transcriptional repressor CTCF: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Transcriptional repressor CTCF

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