SMTL ID : 5yf8.1

Crystals structure of Classical swine fever virus NS5B (residues 1-672, Y471A-E472A mutant)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

monomer

Ligands

7 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 2 residues within 4Å: Chain A: Q.336, K.443 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.439 Salt bridges: A:K.443 ACT.2: 4 residues within 4Å: Chain A: E.333, D.439, K.443, I.444 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.444, A:I.444 ACT.3: 3 residues within 4Å: Chain A: G.184, L.185, H.186 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:H.186 Hydrogen bonds: A:G.184, A:L.185, A:H.186 Salt bridges: A:H.186 ACT.4: 3 residues within 4Å: Chain A: D.273, K.308, Y.317 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.273 Hydrogen bonds: A:Y.317, A:S.412 ACT.5: 8 residues within 4Å: Chain A: A.222, R.268, D.269, V.270, I.288, Y.290, R.296, G.407 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.288 Hydrogen bonds: A:V.270, A:G.407 Salt bridges: A:R.296 ACT.6: 4 residues within 4Å: Chain A: W.556, R.561, R.605, T.606 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.606, A:T.606 Salt bridges: A:R.561 ACT.7: 4 residues within 4Å: Chain A: S.499, R.518, N.519, T.522 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.499, A:N.519, A:N.519 Salt bridges: A:R.518

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, W. et al., A unique intra-molecular fidelity-modulating mechanism identified in a viral RNA-dependent RNA polymerase. Nucleic Acids Res. (2018)

Release Date

2018-09-19

Peptides

RdRp catalytic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RdRp catalytic