SMTL ID : 5yfi.1

Crystal structure of the anti-human prostaglandin E receptor EP4 antibody Fab fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: E.207, H.211 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.207, A:E.207, A:H.211 ZN.2: 2 residues within 4Å: Chain A: K.171, E.217 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.217 ZN.3: 1 residues within 4Å: Chain A: E.101 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.101 ZN.4: 3 residues within 4Å: Chain A: N.160, D.189 Chain B: H.191 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:D.189, B:H.191, H2O.5, H2O.5 ZN.5: 2 residues within 4Å: Chain B: S.36, H.101 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:S.36, B:H.101, H2O.10 ZN.6: 1 residues within 4Å: Chain B: E.20 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.20, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toyoda, Y. et al., Ligand binding to human prostaglandin E receptor EP4at the lipid-bilayer interface. Nat. Chem. Biol. (2019)

Release Date

2018-12-05

Peptides

Light chain of Fab fragment: A
Heavy chain of Fab fragment: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

Light chain of Fab fragment

Heavy chain of Fab fragment

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