SMTL ID : 5ygf.1

Crystal structure of Drosophila melanogaster Papi extended Tudor domain (D287A) in complex with Piwi N-terminal R10-unme peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ASP- GLN- GLY- ARG- GLY- ARG- ARG- ARG- PRO: ASP-GLN-GLY-ARG-GLY-ARG-ARG-ARG-PRO(Non-covalent)

ASP-GLN-GLY-ARG-GLY-ARG-ARG-ARG-PRO.1: 20 residues within 4Å: Chain A: S.10, A.11, V.12, A.13, K.17, W.19, F.65, Y.72, D.92, F.95, Y.98, D.100, S.101, E.102, Y.103, T.141, W.142, I.147, E.151, H.158 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:D.100 Hydrogen bonds: A:V.12, A:V.12, A:K.17, A:Y.72, A:S.101, A:S.101, A:T.141, A:W.142, A:W.142 Water bridges: A:S.14, A:D.92, A:D.92, A:G.99, A:D.100, A:D.100, A:S.101, A:K.144, A:T.177 Salt bridges: A:D.92, A:D.100, A:E.151 pi-Cation interactions: A:F.65, A:Y.72, A:F.95, A:Y.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Structural insights into the sequence-specific recognition of Piwi byDrosophilaPapi. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-03-14

Peptides

GH18329p: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GH18329p

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