SMTL ID : 5ygq.1

Crystal Structure of Ferredoxin NADP+ Oxidoreductase from Rhodopseudomonas palustris

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 35 residues within 4Å: Chain A: V.12, G.13, G.15, P.16, C.17, G.18, V.35, D.36, I.37, L.38, G.43, Q.44, L.48, Y.49, I.54, D.56, E.87, M.88, V.89, A.118, A.119, G.120, G.121, G.122, S.123, F.124, P.257, G.288, D.289, K.298, L.299, I.300 Chain B: Y.328, T.329, T.330 25 PLIP interactions: 19 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:L.48, A:Y.49, B:Y.328, B:T.330 Hydrogen bonds: A:G.15, A:C.17, A:G.18, A:I.37, A:Q.44, A:Q.44, A:Y.49, A:D.56, A:V.89, A:V.89, A:G.121, A:F.124, A:D.289, A:K.298, A:I.300, B:T.329, B:T.330, B:T.330 Water bridges: A:L.301 pi-Stacking: A:Y.49, B:Y.328 FAD.2: 36 residues within 4Å: Chain A: Y.328, T.329, T.330 Chain B: V.12, G.13, G.15, P.16, C.17, G.18, V.35, D.36, I.37, L.38, G.43, Q.44, L.48, Y.49, I.54, D.56, E.87, M.88, V.89, A.118, A.119, G.120, G.121, G.122, S.123, F.124, M.253, P.257, G.288, D.289, K.298, L.299, I.300 27 PLIP interactions: 24 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:L.48, B:Y.49 Hydrogen bonds: B:G.15, B:C.17, B:G.18, B:I.37, B:Q.44, B:Q.44, B:Y.49, B:Y.49, B:D.56, B:V.89, B:V.89, B:G.121, B:F.124, B:D.289, B:K.298, B:I.300, A:T.329, A:T.330 Water bridges: B:A.14, B:G.43, B:G.120, B:I.290, B:L.301 pi-Stacking: B:Y.49, A:Y.328

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seo, D. et al., Kinetic and structural insight into a role of the re-face Tyr328 residue of the homodimer type ferredoxin-NADP+oxidoreductase from Rhodopseudomonas palustris in the reaction with NADP+/NADPH. Biochim Biophys Acta Bioenerg (2019)

Release Date

2018-09-26

Peptides

Ferredoxin--NADP reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ferredoxin--NADP reductase